ma.fernandez@iata.csic.es

Publicaciones

• 1. Nuñez Velez VL, Villamizar Gomez LD, Mendoza Ospina JE, Hayek-Orduz Y, Fernandez-Niño M, Restrepo Restrepo S, Álvarez Solano ÓA, Reyes Barrios LH, Gonzalez Barrios AF*. (2024). DNA shuffling to improve crude-water interfacial activity in biosurfactants with OmpA protein of Escherichia coli. PeerJ 12:e17239 https://doi.org/10.7717/peerj.17239

  2. Ruiz-Moreno HA, Valderrama-Rincon JD., Cala MP., Fernández-Niño M., Gonzalez Barrios AF*. (2024) Enhanced Outer Membrane Vesicle Production in Escherichia coli: from Metabolic Network Model to Designed Strain Lipidomic Profile. https://www.preprints.org/manuscript/202409.1980. Submitted to International Journal of Molecular Sciences (ID: ijms-3249225)

  3. Herrera-Rocha F., Fernández-Niño M., Duitama J., Cala MP., Chica MJ., Wessjohann LA., Davari MD., González Barrios AF*. (2024) FlavorMiner: A Machine Learning Platform for Extracting Molecular Flavor Profiles from Structural Data. J Cheminform 16, 140. https://doi.org/10.1186/s13321-024-00935-9

  4. Ramon Jaimez*, Luigy Barragan, Miguel Fernández-Niño, Oswaldo J. Larreal, and Byron Flores (2024). Pod Production Dynamics and Pod Size Distribution of Theobroma cacao L. Clone CCN 51 in Full Sunlight. International Journal of Agronomy. https://doi.org/10.1155/2024/4242270

  5. Luis Alberto Mejía-Manzano, César Iván Ortiz-Alcaráz, Laura E. Parra Daza, Lina Suarez Medina, Teresa Vargas-Cortez, Miguel Fernández-Niño, Andrés Fernando González Barrios, José González-Valdez* (2024). Saccharomyces cerevisiae biofactory to produce naringenin using a systems biology approach and a bicistronic vector expression strategy in flavonoid production. ASM-Microbiology Spectrum. https://doi.org/10.1128/spectrum.03374-23

  6. Fabio Herrera-Rocha, Ana M. León-Inga, Jenny Lorena Aguirre Mejía, Claudia M. Rodríguez-López, María José Chica, Ludger A. Wessjohann, Andrés Fernando González Barrios, Mónica P. Cala, Miguel Fernández-Niño* (2024). Bioactive and flavor compounds in cocoa liquor and their traceability over the major steps of cocoa post-harvesting processes. Food Chemistry, Volume 435, 2023, 137529, ISSN 0308-8146, https://doi.org/10.1016/j.foodchem.2023.137529

  7. Camargo, F.D.G.; Santamaria-Torres, M.; Cala, M.P.; Guevara-Suarez, M.; Restrepo, S.R.; Sánchez-Camargo, A.; Fernández-Niño, M.; Corujo, M.; Gallo Molina, A.C.; Cifuentes, J.; et al. (2023) Genome-Scale Metabolic Reconstruction, Non-Targeted LC-QTOF-MS Based Metabolomics Data, and Evaluation of Anticancer Activity of Cannabis sativa Leaf Extracts. Metabolites, 13, 788. https://doi.org/10.3390/metabo13070788

  8. Laura E. Parra Daza, Lina Suarez Medina, Albert E. Tafur Rangel, Miguel Fernández-Niño, Luis Alberto Mejía-Manzano, José González-Valdez, Luis H. Reyes, and Andrés Fernando González Barrios*. (2023). Design and Assembly of a Biofactory for (2S)-Naringenin Production in Escherichia coli: Effects of Oxygen Transfer on Yield and Gene Expression. Biomolecules. 13(3):565. https://doi.org/10.3390/biom13030565

  9. Fabio Herrera-Rocha, Miguel Fernández-Niño, Mónica P. Cala, Jorge Duitama, Andrés Fernando González Barrios* (2023) Omics approaches to understand cocoa processing and chocolate flavor development: A review. Food Research International. https://doi.org/10.1016/j.foodres.2023.112555

  10. Fernández-Niño Miguel* and Burgos-Toro Daniela (2022) Engineering microbial biofactories for a sustainable future. Chapter edited by Catalina Correa & Adriana Suarez-Gonzalez in the book: Genomics and the Global Bioeconomy -1st Edition-. ISBN 9780323916011. Publisher: ELSEVIER: https://www.elsevier.com/books/genomics-and-the-global-bioeconomy/patrin...

  11. Fabio Herrera-Rocha, Mónica P. Cala, Ana Maria León-Inga, Jenny Lorena Aguirre Mejía, Claudia M. Rodríguez-López, Sergio Leonardo Florez, María José Chica, Héctor Hugo Olarte, Jorge Duitama, Andrés Fernando González Barrios, Miguel Fernández-Niño* (2022) Lipidomic profiling of bioactive lipids during spontaneous fermentations of fine-flavor cocoa. Food Chemistry. Volume 397. 133845, ISSN 0308-8146. https://doi.org/10.1016/j.foodchem.2022.133845

  12. Díaz-Bustamante ML, Fernández-Niño M, Reyes LH and Alvarez Solano OA (2022) Multiscale Approach to Dairy Products Design. Front. Chem. Eng. 4:830314. https://doi.org/10.3389/fceng.2022.830314

  13. Luis Humberto Reyes and Miguel Fernández-Niño*. (2022) Introductory Chapter: From BioBricks to Synthetic Genomes. Chapter edited by Iva Ribic in the Book: Synthetic Genomics - From Natural to Synthetic Genomes. ISBN 978-1-83969-639-8. Book edited by: Dr. Miguel Fernández-Niño. Publisher: InTechopen.DOI: http://dx.doi.org/10.5772/intechopen.101949

  14. Miguel Fernández-Niño*. (2022) Academic editor of the Book: Synthetic Genomics - From Natural to Synthetic Genomes. ISBN 978-1-83969-639-8. Publisher: InTechopen: https://www.intechopen.com/books/10741

  15. Ramón E. Jaimez*, Luigy Barragan, Miguel Fernández-Niño*, Ludger A. Wessjohann, George Cedeño-Garcia, Ignacio Sotomayor, Francisco Arteaga, (2022): Theobroma cacao L. cultivar CCN 51: A comprehensive review on origin, genetics, sensory properties, production dynamics, and physiological aspects. PeerJ 10:e12676 https://doi.org/10.7717/peerj.12676

  16. Angie Burgos-Toro, Martin Dippe, Andres Felipe Vásquez, Eric Pierschel, Ludger Aloisius Wessjohann and Miguel Fernández-Niño*. (2021): Chapter: Multi-Omics Data Mining: A Novel Tool for BioBrick Design. Chapter edited by Iva Ribic in the Book: Synthetic Genomics - From Biobricks to Synthetic Genomes. ISBN 978-1-83969-639-8. Book edited by: Dr. Miguel Fernández-Niño. Publisher: InTechopen. https://www.intechopen.com/online-first/79432

  17. Fabio Herrera‑Rocha, Mónica P. Cala, Jenny Lorena Aguirre Mejía, Claudia M. Rodríguez‑López, María José Chica, Héctor Hugo Olarte, Miguel Fernández‑Niño* & Andrés Fernando Gonzalez Barrios*. (2021): Dissecting fine‑flavor cocoa bean fermentation through metabolomics analysis to break down the current metabolic paradigm. Scientific Reports 11(21904) https://doi.org/10.1038/s41598-021-01427-8

  18. Fernández-Niño, M., Rodríguez-Cubillos, MJ., Herrera-Rocha, F., Anzola, JM., Cepeda-Hernández, ML., Aguirre, L., Chica, MJ., Olarte, HH., Rodríguez, CM., Calderón, D., Ramírez-Rojas, A., Del Portillo, P., Restrepo, S., González Barrios, A.* (2021): Dissecting on-farm industrial fermentations of fine-flavour cocoa through metagenomic analysis. Scientific Reports 11(8638) https://doi.org/10.1038/s41598-021-88048-3

  19. Ortiz-Torres, M., Fernández-Niño, M., Cruz, JC., Patiño, EJ., Hernández, Y., González Barrios A.* (2020): Rational design of photo-electrochemical hybrid devices based on graphene and Chlamydomonas reinhardtii light-harvesting proteins. Scientific Reports 10(3376) https://www.nature.com/articles/s41598-020-60408-5

  20. Sastoque, A., Triana, S., Ehemann, K., Suarez, L., Restrepo, S., Wösten, H., de Cock, H., Fernández-Niño, M., González Barrios, A.*, Celis Ramírez, AM.* (2020): New Therapeutic Candidates for the Treatment of Malassezia pachydermatis -Associated Infections. Scientific Reports 10(4860) https://www.nature.com/articles/s41598-020-61729-1

  21. Fernández-Niño, M., Rojas, L., Torres, R., Ordoñez, A., Vargas, EF., Pradilla, D., Álvarez Solano, O., González Barrios, A.* (2019): Insights into the behavior of six rationally designed peptides based on Escherichia coli’s OmpA at the water-dodecane interface. PLOS ONE https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0223670

  22. Buitrago Mora, HM., Arango Piñeros, M., Espinosa Moreno, D., Restrepo, S., Cardona Jaramillo, JEC., Álvarez Solano, OA., Fernandez-Niño, M., González Barrios, A.* (2019): Multiscale design of a dairy beverage model composed of Candida utilis single cell protein supplemented with oleic acid. Journal of Dairy Science. 102(11) 9749-9762 https://doi.org/10.3168/jds.2019-16729

  23. Mora-Salguero, DA., Vives-Florez, MJ., Husserl-Orjuela, J., Fernández-Niño, M., González-Barrios, A.* (2019): Evaluation of the phenol degradation capacity of microalgae-bacteria consortia from the bay of Cartagena, Colombia. TecnoLógicas, vol. 22, no. 44, pp. 151-161. ISSN-e 2256-5337 https://revistas.itm.edu.co/index.php/tecnologicas/article/view/1179

  24. Fernández-Niño, M., Swinnen. S., Pulido, S., Stefanoska, D., González-Ramos, D., van Maris, A.J., Marchal, K., Nevoigt, E.* (2018): Identification of novel genes involved in acetic acid tolerance of Saccharomyces cerevisiae using pooled-segregant RNA sequencing. FEMS Yeast Research 18 (8). https://doi.org/10.1093/femsyr/foy100

  25. Mora Salguero, DA., Fernández-Niño, M., Serrano-Bermúdez, LM., Páez Melo, DO., Winck, FV., Caldana, C., González Barrios, A.* (2018): Development of a Chlamydomonas reinhardtii metabolic network dynamic model to describe distinct phenotypes occurring at different CO2 levels. Peer J 6:e5528 https://peerj.com/articles/5528/

  26. Fernández-Niño, M.*, Islam, Z. (2017): The potential of synthetic biology for improving environmental quality and human health in developing countries. Rev. Univ. Ind. Santander. Salud [online]. 2017, vol.49, n.1, pp.93-101. ISSN 0121-0807. Print version ISSN 0121-0807. https://www.redalyc.org/journal/3438/343850079010/html/

  27. Fernández-Niño, M., Giraldo, D., Gomez-Porras, JL., Dreyer, I., González Barrios, A., Arevalo-Ferro, C.* (2017): A synthetic multi-cellular network of coupled self-sustained oscillators. PLOS ONE 12(6): e0180155 DOI: 10.1371/journal.pone.0180155. https://doi.org/10.1371/journal.pone.0180155

  28. Fernández-Niño, M., Marquina, M. Swinnen, S.,Rodríguez-Porrata, B., Nevoigt, E.*, Ariño, J. (2015):The Cytosolic pH of Individual Saccharomyces cerevisiae Cells Is a Key Factor in Acetic Acid Tolerance. Appl Environ Microbiol 81(22): 7813-7821 https://doi.org/10.1128/AEM.02313-15

  29. Swinnen, S., Fernández-Niño, M., González-Ramos, D., van Maris, AJ., Nevoigt, E.* (2014): The fraction of cells that resume growth after acetic acid addition is a strain-dependent parameter of acetic acid tolerance in Saccharomyces cerevisiae. FEMS Yeast Res 14(4): 642-653 https://doi.org/10.1111/1567-1364.12151

  30. Duque, C., Arevalo, C., Tello, E., Fernandez, M., Castellanos, L.* (2013): Bacterial sensors in microfouling assays in the book: STATE OF THE ART IN BIOSENSORS. Edited by Toonika Rinken, ISBN 978-953-51-1004-0, 360 pages, Publisher: InTech, Chapter published on March 13, 2013. https://www.intechopen.com/chapters/43543